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    Home»Emergency»9 Warning Signs of an Unhealthy Gut
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    9 Warning Signs of an Unhealthy Gut

    mobilewebnerd@gmail.comBy mobilewebnerd@gmail.comJune 4, 2025No Comments9 Mins Read
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    9 Warning Signs of an Unhealthy Gut
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    The gut microbiome is the community of microbes (like bacteria and yeast) that live throughout your digestive tract. The balance of friendly vs. harmful types of these microbes influences your gut health, immune function, and mental wellness.

    When the microbes in your gut are off-balance, your body produces subtle (and not-so-subtle) symptoms to warn you that it’s time to make some changes.

    Jump to Key Takeaways.

    1. Frequent Bloating or Gas

    It’s normal to experience bloating occasionally, especially after eating certain foods. For example, high-FODMAP foods—those high in certain carbohydrates known as fermentable oligosaccharides, disaccharides, monosaccharides, and polyols—contain fructans that are broken down in the colon.

    When harmful bacteria or yeast overpopulate the gut, they over-ferment the food in your intestines, creating excess gas. The excess gas can cause a firm, uncomfortable feeling in your belly, sometimes accompanied by audible rumbling, visible distension (swelling), and gas that may be difficult to hide.

    Frequently experiencing gas and discomfort after eating could signal an imbalanced microbiome. These symptoms are common with a condition known as small intestinal bacterial overgrowth (SIBO).

    2. Chronic Constipation or Diarrhea

    Your bathroom habits are a good indicator of your gut health. Most healthy people should have regular bowel movements, defined as at least once per day. The consistency of your stool (poop) can also give you clues about your gut health.

    While occasional constipation or diarrhea are normal, ongoing bowel irregularities are not and can lead to:

    • Chronic constipation, defined as infrequent stools three or fewer times per week, may result from a lack of fiber or sluggish gut motility.
    • Frequent diarrhea, three or more watery bowel movements per day, might indicate inflammation or poor nutrient absorption due to damaged gut lining.

    3. Persistent Fatigue

    You should not ignore ongoing fatigue. While persistent tiredness isn’t always a sign of gut problems, it could be.

    When your gut is not functioning at its best, it can impair your ability to absorb key nutrients like iron, magnesium, and B vitamins, which are essential for energy production.

    Plus, inflammation and a disruption in your gut-brain axis (the communication network between your gut and central nervous system) can interfere with your sleep cycle, leaving you tired no matter how much rest you get.

    Furthermore, research shows that a deficiency in gut germs that produce butyrate (a short-chain fatty acid central to the health of the gut-brain axis) can cause fatigue.

    4. Unexplained Weight Changes

    Significant unintentional weight changes in either direction could be related to gut imbalances.

    For instance, some bacteria might influence how your body stores fat, regulate your appetite hormones (like leptin and ghrelin), and regulate your blood sugar levels.

    5. Skin Rashes

    Skin rashes may be associated with gut inflammation and an imbalance of gut bacteria, called dysbiosis. When the integrity of your gut barrier is compromised, this can trigger a systemic inflammation that shows up on your skin.

    6. Frequent Infections or Illness

    Your gut houses 70% to 80% of your immune cells. This means that when your gut is unhealthy, it can negatively affect your immune function.

    Over time, this might make you more vulnerable to harmful germs that cause colds and infections, leading to slower recovery times. If you feel like you can’t catch a break with sickness, it could be the result of poor gut health.

    7. Brain Fog or Mood Swings

    The gut-brain axis indicates a bidirectional relationship between gut health and mental health. Suddenly feeling more anxious, irritable, down, or “foggy” could be related to poor sleep or excess stress, but it might also be related to your gut.

    Around 95% of serotonin, a brain chemical referred to as the “feel-good chemical” that’s related to emotional regulation, is produced in the gut. A gut microbiome imbalance could manifest as mental health effects.

    8. Bad Breath or Coated Tongue

    Bad breath (called halitosis) can indicate that your gut microbiome is off. If you notice unusually bad breath or have a white-coated tongue that’s not the result of oral hygiene, it might be gut-related.

    Helicobacter pylori (H. pylori) infections are a type of gastric infection associated with these symptoms.

    An overgrowth of yeast in the mouth could also lead to foul-smelling byproducts that make their way out through your breath. An unhealthy gut can also cause sluggish digestion, which could impact food fermentation in the gut and cause bad breath.

    9. Sugar Cravings and Poor Appetite Control

    Certain bacteria thrive on sugar, so when they dominate your gut, this might trigger more sugary cravings.

    Gut health imbalances can also affect your appetite-regulating hormones, leaving you less satisfied and possibly eating more than you intended.

    How to Restore Your Gut Health

    If you checked off boxes in your head while reading this, start by taking inventory of your current habits and how they might influence your gut health.

    Some things that can help support a healthy gut include:

    • Eat more fiber: You can find fiber in plant foods like fruits, vegetables, legumes (peas, beans, and lentils), nuts, seeds, and whole grains.
    • Reduce ultra-processed food intake: Highly processed foods and drinks like donuts, pastries, bacon, and soda are high in added sugar, sodium, and unhealthy fats, and linked to unhealthy gut changes.
    • Improve your sleep: Aim to get seven to nine hours of consistent rest per night to promote healthy gut bacteria diversity.
    • Manage your stress: Engage in calming practices like meditation, yoga, nature walks, and creative outlets.
    • Move your body: Get physical activity by doing things you enjoy, like jogging, playing tennis, swimming, weight lifting, or biking.
    • Limit antibiotic use: Antibiotics can be necessary sometimes, but it’s important to limit unnecessary use or overuse, as this can promote an ongoing imbalance of your good gut bacteria.

    Most importantly, consult your healthcare provider if you’re experiencing gut health issues or those you may not be aware are related to gut health and are not sure what’s causing them or what to do.

    Key Takeaways

    • Your gut microbiome plays a critical role in how you feel, and when things are imbalanced, they can manifest as physical, emotional, and mental symptoms.
    • If you think you’re dealing with an unhealthy gut, minor changes to your everyday habits may help you get things back in alignment.
    • Improvements often happen through dietary changes, better sleep, and stress management, but it can also be helpful to speak with a healthcare provider.
    Verywell Health uses only high-quality sources, including peer-reviewed studies, to support the facts within our articles. Read our editorial process to learn more about how we fact-check and keep our content accurate, reliable, and trustworthy.
    1. Nanayakkara WS, Skidmore PM, O’Brien L, et al. Efficacy of the low FODMAP diet for treating irritable bowel syndrome: the evidence to date. Clin Exp Gastroenterol. 2016 Jun 17;9:131-42. doi:10.2147/CEG.S86798

    2. Crucillà S, Caldart F, Michelon M, et al. Functional abdominal bloating and gut microbiota: an update. Microorganisms. 2024 Aug 14;12(8):1669. doi:10.3390/microorganisms12081669

    3. Quigley EMM, Murray JA, Pimentel M. AGA clinical practice update on small intestinal bacterial overgrowth: expert review. Gastroenterology. 2020 Oct;159(4):1526-1532. doi:10.1053/j.gastro.2020.06.090

    4. Diaz S, Bittar K, Hashmi MF, et al. Constipation. [Updated 2023 Nov 12]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK513291/

    5. Nemeth V, Pfleghaar N. Diarrhea. [Updated 2022 Nov 21]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK448082

    6. Liu H, Wang J, He T, et al. Butyrate: a double-edged sword for health? Adv Nutr. 2018 Jan 1;9(1):21-29. doi:10.1093/advances/nmx009

    7. Guo C, Che X, Briese T, et al. Deficient butyrate-producing capacity in the gut microbiome is associated with bacterial network disturbances and fatigue symptoms in ME/CFS. Cell Host Microbe. 2023 Feb 8;31(2):288-304.e8. doi:10.1016/j.chom.2023.01.004

    8. Leeuwendaal NK, Cryan JF, Schellekens H. Gut peptides and the microbiome: focus on ghrelin. Curr Opin Endocrinol Diabetes Obes. 2021 Apr 1;28(2):243-252. doi:10.1097/MED.0000000000000616

    9. De Pessemier B, Grine L, Debaere M, et al. Gut-skin axis: Current knowledge of the interrelationship between microbial dysbiosis and skin conditions. Microorganisms. 2021 Feb 11;9(2):353. doi: 10.3390/microorganisms9020353. PMID: 33670115; PMCID: PMC7916842

    10. Wiertsema SP, van Bergenhenegouwen J, Garssen J, et al. The interplay between the gut microbiome and the immune system in the context of infectious diseases throughout life and the role of nutrition in optimizing treatment strategies. Nutrients. 2021 Mar 9;13(3):886. doi:10.3390/nu13030886.

    11. Evrensel A, Ceylan ME. The gut-brain axis: the missing link in depression. Clin Psychopharmacol Neurosci. 2015 Dec 31;13(3):239-44. doi:10.9758/cpn.2015.13.3.239

    12. Banskota S, Ghia JE, Khan WI. Serotonin in the gut: Blessing or a curse. Biochimie. 2019 Jun;161:56-64. doi: 10.1016/j.biochi.2018.06.008. Epub 2018 Jun 14. PMID: 29909048.

    13. Li Z, Li J, Fu R, et al. Halitosis: etiology, prevention, and the role of microbiota. Clin Oral Investig. 2023 Nov;27(11):6383-6393. doi:10.1007/s00784-023-05292-9

    14. HajiFattahi F, Hesari M, Zojaji H, et al. Relationship of halitosis with gastric Helicobacter pylori infection. J Dent (Tehran). 2015 Mar;12(3):200-5. PMID:26622273; PMCID:PMC4663310

    15. Makki K, Deehan EC, Walter J, et al. The impact of dietary fiber on gut microbiota in host health and disease. Cell Host Microbe. 2018 Jun 13;23(6):705-715. doi:10.1016/j.chom.2018.05.012

    16. Song Z, Song R, Liu Y, et al. Effects of ultra-processed foods on the microbiota-gut-brain axis: the bread-and-butter issue. Food Res Int. 2023 May;167:112730. doi:10.1016/j.foodres.2023.112730

    17. Smith RP, Easson C, Lyle SM, et al. Gut microbiome diversity is associated with sleep physiology in humans. PLoS One. 2019 Oct 7;14(10):e0222394. doi:10.1371/journal.pone.0222394

    18. Foster JA, Rinaman L, Cryan JF. Stress & the gut-brain axis: regulation by the microbiome. Neurobiol Stress. 2017 Mar 19;7:124-136. doi:10.1016/j.ynstr.2017.03.001

    19. Mailing LJ, Allen JM, Buford TW, et al. Exercise and the gut microbiome: a review of the evidence, potential mechanisms, and implications for human health. Exerc Sport Sci Rev. 2019 Apr;47(2):75-85. doi:10.1249/JES.0000000000000183

    20. Patangia DV, Ryan CA, Dempsey E, et al. Impact of antibiotics on the human microbiome and consequences for host health. Microbiologyopen. 2022 Feb;11(1):e1260. doi:10.1002/mbo3.1260

    Caucasian woman with dark blonde hair and gold leaf earrings wearing denim tank top and smiling outside.

    By Lauren Panoff, MPH, RD

    Panoff is a registered dietician, writer, and speaker with over a decade of experience specializing in the health benefits of a plant-based lifestyle.

    Thanks for your feedback!

    What is your feedback?




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